PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G147300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 452aa    MW: 49820 Da    PI: 5.9017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G147300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16198244455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Aqcoe5G147300.1.p 198 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 244
                        6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-20191255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-20191254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.86E-17197248No hitNo description
PfamPF000103.1E-13198244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MYDTTCSSPL PTRPPFESSD EISLFLHHLL HSSSSSSTLI SEQNKSLINQ TLPPSSSSSP  60
CLSTSLQQQQ PSTLFSSSNP QFKSLFLDDH NRPSQSTRVL DLDNNNNNNN NNNNNRVTSA  120
STDDSSVPLE FKESGIVGDG GSGDCGPVTV STKRRKQLIE NDFDDFDCES EEGLEGSEGP  180
TKSAPSRNSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA SMLDEAIEYL  240
KQLQLQVQML SMRNGFSLHP MYLPGVLQPL QMPQVRVGFD EGNGLPPHMN IGRDTLPVNP  300
EPSTQTSFGL SNHCTTSNPP VVIPNMTNIT PSETSYGLDS SLQSHQGSFQ LSSTSEEIYR  360
EQMLRQQQFY VSQSSHNPSG DNKMKSIATG SLPFDVQASG LEHPNCMEAS ILHRERSESM  420
LPKDVNNSQT FMQQFHSLQT GLSLPKDNPA R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270226.11e-104PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA46e-50SPT_ARATH; Transcription factor SPATULA
TrEMBLD7SVW11e-101D7SVW1_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00450.t011e-100(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-46bHLH family protein